All the softwares and user manuals can be found in github:

Our Github repo

- IDP 0.1.9 - Isoform Detection and Prediction

- NP-SMLR - Nucleosome Positioning detection by Single-Molecule Long-Read sequencing

- IDP-ASE - haplotyping and quantifying allele-specific expression from Second Generation Sequencing and PacBio sequencing

- IDP-fusion 1.1.1 - Isoform Detection and Prediction for Fusion Genes

- LSC 2.0 - Rapid error correction tool for PacBio data

- SpliceMap 3.3.5.2 - De novo splice junction discovery and alignment tool

- AlignQC 1.2 - assessing an alignment and generating reports that are easy to share

- IDP-denovo 0.2 - a tool for de novo transcriptome assembly and isoform annotation by hybrid sequencing

- GenoCone 0.1 - a tool for subclone inference and studying tumor heterogenity