• AlignQC is a tool for assessing an alignment,
    and generating reports that are easy to share

Latest News: AlignQC is released read more


AlignQC aims to provide useful quality control information based on an Alignment file. If any of the following requirements conflict with your lab's set up, please contact us.

System Requirements

Software Requirements

Alignment file

Reference files

Only the alignment in BAM formant is necessary but to acheive all the analyses you should specify reference fasta and a reference genepred transcriptome